PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G137700.1.p
Common NameGLYMA_12G137700, LOC100797644
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 569aa    MW: 63146.3 Da    PI: 6.2813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G137700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.34.1e-1291985671373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+a+s+++++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l++++l++e++P+
  Glyma.12G137700.1.p 198 LKQLLIVCAKALSENNMQHFDQLIEKARSAVSITGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPE---GKDLLSYMQLLYEICPY 284
                          679******************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI ea  +e+++HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rLa + +++++++ef
  Glyma.12G137700.1.p 285 LKFGYMAANGAIAEACRNEDQIHIIDFQIGQGTQWVTLLQALAARPGGAPHVRITGIDDPLSKyvRGDGLEAVGKRLAAISQTFNIRVEF 374
                          ***********************************************************999999************************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v     d++ + L+v+pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv ++veqe+++n+++F++rf+e+l+yy a+f
  Glyma.12G137700.1.p 375 HG-VPVLAPDVTKDVLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAMF 463
                          **.677889999****************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+s+ +i++E+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g++
  Glyma.12G137700.1.p 464 ESIDVSLPRKSKVQINMEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYMNSVIRSLLRCYS-KHYNLVEKDGAM 552
                          *************************************************************************9999.55********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWkdr+L+s+SaW
  Glyma.12G137700.1.p 553 LLGWKDRNLISTSAW 567
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.055172549IPR005202Transcription factor GRAS
PfamPF035141.4E-126198567IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDLNQFLNFN VISSEGFPCT SSCTPISPIS NQLLGSLKLD IGNSPNSALS SHFDSDTLSS  60
ALSDSQELHT SGEIHSGVNS CKSLQESNHY LHRPVSFVDH LQDGLHLSTR SFLPQDASYD  120
HETRHALLEL ETALMAPDGE DQITTSSTSL GVGSRPTTSC QRNRSWSSEG QSSDVAHVEK  180
HHKSVEEESL QGFPSCNLKQ LLIVCAKALS ENNMQHFDQL IEKARSAVSI TGEPIQRLGA  240
YLVEGLVARK EASGNNIYHA LRCREPEGKD LLSYMQLLYE ICPYLKFGYM AANGAIAEAC  300
RNEDQIHIID FQIGQGTQWV TLLQALAARP GGAPHVRITG IDDPLSKYVR GDGLEAVGKR  360
LAAISQTFNI RVEFHGVPVL APDVTKDVLD VRPGEALAVN FPLQLHHTAD ESVDMSNPRD  420
GLLRLVKSLS PKVTTLVEQE SNTNTTPFFN RFIETLDYYL AMFESIDVSL PRKSKVQINM  480
EQHCLARDIV NIIACEGKER VERHELLGKW KSRLTMAGFR QYPLSSYMNS VIRSLLRCYS  540
KHYNLVEKDG AMLLGWKDRN LISTSAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-611955671374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.598610.0flower| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G137700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592516.10.0scarecrow-like protein 21 isoform X1
RefseqXP_028192829.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445HPM30.0A0A445HPM3_GLYSO; Chitin-inducible gibberellin-responsive protein 1
TrEMBLK7LUN80.0K7LUN8_SOYBN; Uncharacterized protein
STRINGGLYMA12G16750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-177GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]