PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G141700.1.p
Common NameGLYMA_12G141700, LOC100818424
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 475aa    MW: 52204.3 Da    PI: 7.1442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G141700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063654031154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Glyma.12G141700.1.p 365 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 403
                          5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11364421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.71E-7364407No hitNo description
SMARTSM003530.0049365409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-9368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSDDQFQASG NWWETARSVR FESRESQSSS GLTNNIGSYA ASWQQHQQHD MATRSSSMDN  60
NSVSGGSSVV FHDQKQLQVH DSSPAATSTN DPNFHMMALG LSSQAMDWSQ ASLPLRGEKG  120
SENSFRSMLQ ENLSSSGTNF QQQECGSNSI GLSQHHHHHH QQVHWKPEKL FSAESSSNEF  180
KRGFSLDQTQ FSPQYSSGDS TVTSQGLPCS FQIDYVGNPS SILQGLLGQE SNNNQQQPHQ  240
GGGAMNFPYS AASYGLNSNI ELVPSWSKVP QFLRASPPKQ PPNNQLHFTN NAPFWNANSE  300
PAIKDSRSNF IPSLQPPFPT SNFDVQSKNI SEVRDSSGVV KKSGSEAAPK RPRNETPSPL  360
PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVTVL STPYMKSGAP  420
IQHQQSSGKS KESEGPKQDL RSRGLCLVPV SSTFPVTHEP TVEYWTPTFG GTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G141700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-74AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541039.20.0transcription factor bHLH123
TrEMBLI1LSS70.0I1LSS7_SOYBN; Uncharacterized protein
STRINGGLYMA12G17630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-80bHLH family protein