PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G152600.1.p
Common NameGLYMA_12G152600, Glyma12g23950.1, LOC100127388
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 468aa    MW: 50843.4 Da    PI: 7.8039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G152600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.11e-24160216259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vk+   +rsYY+Ct+++C++kk ++ +++ ++v+ei+Y+++Hnh+
  Glyma.12G152600.1.p 160 SDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKK-IKFCDHSGHVIEIVYKSQHNHD 216
                          7********************************98.999999***************7 PP
2WRKY91.28e-29330386359
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dgy+WrKYGqK vkg+++ r+YYrCts+gCpv+k++e++ ++ k+++itY+g H+h+
  Glyma.12G152600.1.p 330 DGYRWRKYGQKLVKGNPHFRNYYRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHD 386
                          9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.085154218IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-22156218IPR003657WRKY domain
SuperFamilySSF1182901.96E-20158218IPR003657WRKY domain
SMARTSM007741.2E-24159217IPR003657WRKY domain
PfamPF031061.3E-17161216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-30313388IPR003657WRKY domain
SuperFamilySSF1182909.15E-26322388IPR003657WRKY domain
PROSITE profilePS5081130.618323388IPR003657WRKY domain
SMARTSM007743.5E-32328387IPR003657WRKY domain
PfamPF031061.2E-22330385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEEDEETQQR VTDSSLSTES RTSTPSDGAP PNSETLVHRS SLPHDLATHM QGSSTAHKGG  60
KAESKVSAQP PDEETIEKDA VEAPQKQTEN QLQSVCSTSL SELSPTSVSH SLSSALSPTV  120
SQQRPSPPKA NSVQVSKGDK GTPSDGTTLS SVSAVRASAS DGYNWRKYGQ KQVKNPMGSR  180
SYYKCTHSNC CAKKIKFCDH SGHVIEIVYK SQHNHDPPHK IDTTKESKLL PSSEPKEESS  240
VPKQSTKVLN NSDPSSSPKE PLQEAPCNGD KNLENSSNVE NGKIILKEKH VNDREPKRRL  300
NNGDLDSAVK HGKKPKFVVH ATEDVGISGD GYRWRKYGQK LVKGNPHFRN YYRCTSSGCP  360
VRKHIETAVD NSKALIITYK GVHDHDMPVP KKRHGPPSAS LVAAAAPASM NNVQFKKTGL  420
LQSQETEAQC SEDTEGELMG EAMDLEGEKA IESARTLLSI GFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-25316388274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215020.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G152600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312380.0KT031238.1 Glycine max clone HN_CCL_32 WRKY transcription factor (Glyma12g23950.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304517.10.0WRKY transcription factor 44
RefseqXP_028194618.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-113WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A445HQN90.0A0A445HQN9_GLYSO; Putative WRKY transcription factor 32 isoform A
TrEMBLI1LT430.0I1LT43_SOYBN; WRKY transcription factor
STRINGGLYMA12G23950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Representative plantOGRP10318610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-99WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]