PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G152600.2.p
Common NameGLYMA_12G152600, LOC100127388
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 464aa    MW: 50246.8 Da    PI: 7.6272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G152600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.11e-24160216259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vk+   +rsYY+Ct+++C++kk ++ +++ ++v+ei+Y+++Hnh+
  Glyma.12G152600.2.p 160 SDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKK-IKFCDHSGHVIEIVYKSQHNHD 216
                          7********************************98.999999***************7 PP
2WRKY72.94.2e-23330382359
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dgy+WrKYGqK vkg+++    +rCts+gCpv+k++e++ ++ k+++itY+g H+h+
  Glyma.12G152600.2.p 330 DGYRWRKYGQKLVKGNPH----FRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHD 382
                          9***************96....99********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.085154218IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-22156218IPR003657WRKY domain
SuperFamilySSF1182901.96E-20158218IPR003657WRKY domain
SMARTSM007741.2E-24159217IPR003657WRKY domain
PfamPF031061.3E-17161216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-24313384IPR003657WRKY domain
SuperFamilySSF1182901.27E-20322384IPR003657WRKY domain
PROSITE profilePS5081125.339323384IPR003657WRKY domain
SMARTSM007743.8E-27328383IPR003657WRKY domain
PfamPF031069.6E-17330381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEEDEETQQR VTDSSLSTES RTSTPSDGAP PNSETLVHRS SLPHDLATHM QGSSTAHKGG  60
KAESKVSAQP PDEETIEKDA VEAPQKQTEN QLQSVCSTSL SELSPTSVSH SLSSALSPTV  120
SQQRPSPPKA NSVQVSKGDK GTPSDGTTLS SVSAVRASAS DGYNWRKYGQ KQVKNPMGSR  180
SYYKCTHSNC CAKKIKFCDH SGHVIEIVYK SQHNHDPPHK IDTTKESKLL PSSEPKEESS  240
VPKQSTKVLN NSDPSSSPKE PLQEAPCNGD KNLENSSNVE NGKIILKEKH VNDREPKRRL  300
NNGDLDSAVK HGKKPKFVVH ATEDVGISGD GYRWRKYGQK LVKGNPHFRC TSSGCPVRKH  360
IETAVDNSKA LIITYKGVHD HDMPVPKKRH GPPSASLVAA AAPASMNNVQ FKKTGLLQSQ  420
ETEAQCSEDT EGELMGEAMD LEGEKAIESA RTLLSIGFEI KPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21316384274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215020.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G152600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312380.0KT031238.1 Glycine max clone HN_CCL_32 WRKY transcription factor (Glyma12g23950.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592599.10.0WRKY transcription factor 44 isoform X1
RefseqXP_028194619.10.0probable WRKY transcription factor 32 isoform X2
SwissprotP595831e-108WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A445HQN60.0A0A445HQN6_GLYSO; Putative WRKY transcription factor 32 isoform B
TrEMBLK7LV250.0K7LV25_SOYBN; Uncharacterized protein
STRINGGLYMA12G23950.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.19e-95WRKY DNA-binding protein 32