PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G160100.1.p
Common NameGLYMA_12G160100, LOC100793870
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 134aa    MW: 15387.8 Da    PI: 10.1101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G160100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.31.8e-37211513128
                  NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100
                          elv +yLk+kv + +l++ ++i+e++++k++PwdLp      e+e yfFs++  ky++g+r+nrat+sgyWkatg dk+++++  ++++ 
  Glyma.12G160100.1.p   2 ELVLQYLKRKVFSCPLPA-SIIPELHVCKSDPWDLPGD---LEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSkgNNQVF 87 
                          9*****************.89***************54...46799***********************************997777789 PP

                  NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                           + ktLvf +g+ p g++tdW+mheyrl
  Glyma.12G160100.1.p  88 EMNKTLVFCRGKPPYGSRTDWIMHEYRL 115
                          **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.5551133IPR003441NAC domain
PfamPF023654.1E-162115IPR003441NAC domain
SuperFamilySSF1019415.23E-402122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MELVLQYLKR KVFSCPLPAS IIPELHVCKS DPWDLPGDLE QERYFFSTKV AKYPNGNRSN  60
RATNSGYWKA TGLDKQIVTS KGNNQVFEMN KTLVFCRGKP PYGSRTDWIM HEYRLILNGS  120
QSKVRPNKLL LFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-30211629143NO APICAL MERISTEM PROTEIN
1ut4_B1e-30211629143NO APICAL MERISTEM PROTEIN
1ut7_A1e-30211629143NO APICAL MERISTEM PROTEIN
1ut7_B1e-30211629143NO APICAL MERISTEM PROTEIN
3swm_A1e-30211632146NAC domain-containing protein 19
3swm_B1e-30211632146NAC domain-containing protein 19
3swm_C1e-30211632146NAC domain-containing protein 19
3swm_D1e-30211632146NAC domain-containing protein 19
3swp_A1e-30211632146NAC domain-containing protein 19
3swp_B1e-30211632146NAC domain-containing protein 19
3swp_C1e-30211632146NAC domain-containing protein 19
3swp_D1e-30211632146NAC domain-containing protein 19
4dul_A1e-30211629143NAC domain-containing protein 19
4dul_B1e-30211629143NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268920.0cotyledon| hypocotyl| leaf| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G160100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619150.0EU661915.1 Glycine max NAC domain protein (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535156.14e-97NAC domain-containing protein 83
RefseqXP_028193310.14e-97NAC domain-containing protein 83-like
SwissprotQ9FY934e-62NAC83_ARATH; NAC domain-containing protein 83
TrEMBLK7LIP48e-96K7LIP4_SOYBN; Uncharacterized protein
STRINGGLYMA10G20830.21e-96(Glycine max)
STRINGGLYMA12G18996.11e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-64NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]