PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G162700.1.p
Common NameGLYMA_12G162700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 130aa    MW: 14427.2 Da    PI: 9.9024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G162700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-202570251
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                         +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa++
  Glyma.12G162700.1.p 25 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAL 70
                         59*******.**********8...557*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-242584IPR001471AP2/ERF domain
PfamPF008472.3E-142570IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-262571IPR001471AP2/ERF domain
PROSITE profilePS5103220.5742570IPR001471AP2/ERF domain
CDDcd000181.28E-152557No hitNo description
SuperFamilySSF541717.19E-192571IPR016177DNA-binding domain
PRINTSPR003674.7E-122637IPR001471AP2/ERF domain
PRINTSPR003674.7E-124864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAPRDINRSN VVVAGGSNPT RKEIRYRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE  60
AARAYDAAAL ARPVVFFDAF ERAEVRASFD LPVAAFSDSD SSTVMDYERG SRRRVLDLDL  120
NVPPPPEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-181571461Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.327913e-99cotyledon| flower| hypocotyl| meristem| seed coat
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G162700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353743e-72AC235374.1 Glycine max strain Williams 82 clone GM_WBb0106J23, complete sequence.
GenBankAC2358343e-72AC235834.2 Glycine max clone GM_WBb0038B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527229.12e-59ethylene-responsive transcription factor 4
SwissprotQ9FE675e-29ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0R0HCT67e-86A0A0R0HCT6_SOYBN; Uncharacterized protein
STRINGGLYMA06G35710.19e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15712710
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-23erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]