PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G165800.1.p
Common NameGLYMA_12G165800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 199aa    MW: 22897.4 Da    PI: 8.937
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G165800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer58.81.2e-1867115357
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                           v+YkeCl+Nh a+lG  ++DGC  +++        +al Ca CgCHRnFH +++
  Glyma.12G165800.1.p  67 VVTYKECLHNHSAALGHVTYDGCVKYIAG------EDALLCACCGCHRNFHHKNT 115
                          689*************************8......579*************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-1568115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-970113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152315.87370114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.4E-18124194IPR009057Homeodomain-like
SuperFamilySSF466897.56E-13126193IPR009057Homeodomain-like
PROSITE profilePS500719.329133197IPR001356Homeobox domain
TIGRFAMsTIGR015652.7E-17135191IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEMRPVTRCI KTILEVDTYT HAPPSPFYLS LTPSMRMHTH PSISINLLLN FTMSNININH  60
PLPIDEVVTY KECLHNHSAA LGHVTYDGCV KYIAGEDALL CACCGCHRNF HHKNTIFTAE  120
PQTQTPDQVQ EMRSKRKKRT TFSSEHKNKL IRFAESVGWK PRKEKKDEIE SFCSEMGITR  180
RMFIVWLINN RHRAINNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G165800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593237.11e-108zinc-finger homeodomain protein 2
RefseqXP_028193340.11e-108zinc-finger homeodomain protein 2-like
TrEMBLK7LVB61e-148K7LVB6_SOYBN; Uncharacterized protein
STRINGGLYMA12G28701.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-24homeobox protein 22