PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G168600.1.p
Common NameGLYMA_12G168600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 191aa    MW: 21965.1 Da    PI: 8.8842
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G168600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer48.22.5e-1558107257
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                          e v+YkeCl+Nh a+l   ++DGC  +++        +al Ca CgC RnFH +++
  Glyma.12G168600.1.p  58 EVVTYKECLHNHSAALDHVTYDGCVKYIAG------EDALLCACCGCRRNFHHKNT 107
                          5799*************************8......579*************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.7E-1260107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-762105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152313.90562106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.2E-21116186IPR009057Homeodomain-like
SuperFamilySSF466891.62E-14118185IPR009057Homeodomain-like
PROSITE profilePS500719.782125189IPR001356Homeobox domain
TIGRFAMsTIGR015655.2E-19127183IPR006455Homeodomain, ZF-HD class
CDDcd000860.00474128183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MHQNHIRSGH VHYVPPSPFY LSLSPLVQMH THPSISINLL LNFTMSDINI NHPLPTHEVV  60
TYKECLHNHS AALDHVTYDG CVKYIAGEDA LLCACCGCRR NFHHKNTIFT AEPQTQTPDQ  120
VQEMRSKRKK RTTFSSEQKN KLIRFAESVG WKPRKEKKDE IESFCSEMGI TRRKFVVWLS  180
NNRHQAINDA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G168600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593245.11e-108zinc-finger homeodomain protein 2
RefseqXP_028193348.11e-108zinc-finger homeodomain protein 2-like
TrEMBLA0A445HRG91e-142A0A445HRG9_GLYSO; Zinc-finger homeodomain protein 3
TrEMBLK7LVE11e-142K7LVE1_SOYBN; Uncharacterized protein
STRINGGLYMA12G29001.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-23homeobox protein 22