PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G168700.1.p
Common NameGLYMA_12G168700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 163aa    MW: 18778.5 Da    PI: 9.0898
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G168700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer52.31.3e-163079257
          ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         e v+YkeCl+Nh  +lG  ++DGC  ++         +al Ca Cg HRnFH +++
  Glyma.12G168700.1.p 30 EVVTYKECLHNHSTTLGHVTYDGCVKYIVG------EDALLCACCGSHRNFHHKNT 79
                         5799************************98......579*************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.5E-143279IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152313.7993478IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-73477IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.7E-2188158IPR009057Homeodomain-like
SuperFamilySSF466897.27E-1590157IPR009057Homeodomain-like
PROSITE profilePS5007110.15597161IPR001356Homeobox domain
TIGRFAMsTIGR015653.0E-1999155IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MHTHPSISIN LLLNFTMSDI NINHPLPTHE VVTYKECLHN HSTTLGHVTY DGCVKYIVGE  60
DALLCACCGS HRNFHHKNTI FIAEPQTQTP DQVQEMRSKR KKRTTFSSEQ KNKLIRFAES  120
VGWKPRKEKK DEIESFCSEM GITRRMFVVW LSNNRHRAIN NA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G168700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593246.11e-108zinc-finger homeodomain protein 5
RefseqXP_028193349.11e-108zinc-finger homeodomain protein 5-like
TrEMBLK7LVE21e-119K7LVE2_SOYBN; Uncharacterized protein
STRINGGLYMA12G29010.21e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-24homeobox protein 22