PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G171000.2.p
Common NameGLYMA_12G171000, LOC100812909
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 667aa    MW: 74502.3 Da    PI: 8.0377
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G171000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-2430131199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      ++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F  
  Glyma.12G171000.2.p  30 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKK-QRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL- 117
                          99****************************8633.345679************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+++++r+
  Glyma.12G171000.2.p 118 -RGENGELRLGIRRA 131
                          .4499999****996 PP
2Auxin_resp116.42.4e-38156238182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+s ks+F+v+Y+Pras+++F v+++k+ k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L
  Glyma.12G171000.2.p 156 VANAISAKSMFHVFYSPRASHADFAVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCtSGIVTGMSDLDPYKWPKSKWRCL 238
                          689********************************************************9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-4421142IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-4023141IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-2328130No hitNo description
PROSITE profilePS5086313.22530132IPR003340B3 DNA binding domain
SMARTSM010191.7E-2430132IPR003340B3 DNA binding domain
PfamPF023623.6E-2230131IPR003340B3 DNA binding domain
PfamPF065071.7E-32156238IPR010525Auxin response factor
PROSITE profilePS5174516.779531621IPR000270PB1 domain
SuperFamilySSF542772.29E-8533602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MYMEGKELEK LGADEEGNET TPTKSTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  60
YKKQRPSQEL VAKDLHGVEW KFRHIYRGQP RRHLLTTGWS IFVSQKNLVS GDAVLFLRGE  120
NGELRLGIRR AARPRNGLPE SIVGSQSYYP NFLSSVANAI SAKSMFHVFY SPRASHADFA  180
VPYQKYIKSI KNPVTIGTRF KMKFEMDESP ERRCTSGIVT GMSDLDPYKW PKSKWRCLMV  240
RWDEDIEINH QDRVSPWEVD PSASLPPLSI QSSRRLKKLR PGLLAAAPNH LTTGSSGFMD  300
SEESVRSSKV LQGQENTGFM SLYYGCDTVT KQPEFEIRSP SHPNLASTGV RKIAAAEFMR  360
VHPSSYAGFT ETNMFPRVLQ GQEICPFRSL AGKVDLNFGS WGKPNVSYTN YNLHQATKPN  420
FHSFGPEVVQ TAYFPYGDIH KAGQGSSMLC SNPTNFQRED IPFNTPSIQS GITIPNEQKL  480
QDNISGAASL GANMRIPNDD NFKGKVNACK LFGFPLSRET TAQNLQNSSK RSCTKVHKQG  540
SLVGRAIDLS RLSSYNDLLI ELERLFSMEG LLIDPNKGWR ILYTDSENDI MVVGDDPWHL  600
PFVCSEFCDV VSKIHIHTQE EVEKMTIGMM INDDSQSCLE QAPVMVEASK SSSVGQPDSS  660
PTVVRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-8922261116354Auxin response factor 1
4ldw_A4e-8922261116354Auxin response factor 1
4ldw_B4e-8922261116354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.247370.0cotyledon| epicotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G171000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172710.0FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592680.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A445HRH50.0A0A445HRH5_GLYSO; Auxin response factor
TrEMBLK7LVF60.0K7LVF6_SOYBN; Auxin response factor
STRINGGLYMA12G29280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]