PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G171600.1.p
Common NameGLYMA_12G171600, LOC100777776
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 350aa    MW: 39983.7 Da    PI: 7.3824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G171600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51131392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          ppGfrFhP+deel+v+yL++kv++++l++  +i+e+d+yk++Pw+Lp+k   +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Glyma.12G171600.1.p  13 PPGFRFHPSDEELIVHYLENKVSSRPLPA-CIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKP 101
                          9**************************99.78***************8777899************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +ls+ +++ +g+kk Lvfy+gr pkg ktdW+m+eyrl
  Glyma.12G171600.1.p 102 ILSScGSRRIGVKKALVFYSGRPPKGAKTDWIMNEYRL 139
                          ***988889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-629166IPR003441NAC domain
PROSITE profilePS5100559.87312166IPR003441NAC domain
PfamPF023651.9E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGDQHGSNY SFPPGFRFHP SDEELIVHYL ENKVSSRPLP ACIIAEIDLY KYNPWELPNK  60
SLFGEEEWYF FSPRDRKYPN GLRPNRAAAS GYWKATGTDK PILSSCGSRR IGVKKALVFY  120
SGRPPKGAKT DWIMNEYRLV DTTIKSSRLK GSMRLDDWVL CRVRYKGYSQ KNSCENQESP  180
SELNLSAKLL RSEENPTKMN CRADMIPDYQ YKDYQIIASI LVGGPIPPIE SMPNLSFKGC  240
KGNNVVSDYE DGFTKGNSQT TIPSLESYFN PLTRKSNEDE QYGNLISFNR KFNTDNRMDG  300
STSKVLNSRE LNCYNQNHSQ DDIFNGNPPD PTINFQELNE LDFSGRYHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-68817613171NO APICAL MERISTEM PROTEIN
1ut4_B1e-68817613171NO APICAL MERISTEM PROTEIN
1ut7_A1e-68817613171NO APICAL MERISTEM PROTEIN
1ut7_B1e-68817613171NO APICAL MERISTEM PROTEIN
3swm_A1e-68817616174NAC domain-containing protein 19
3swm_B1e-68817616174NAC domain-containing protein 19
3swm_C1e-68817616174NAC domain-containing protein 19
3swm_D1e-68817616174NAC domain-containing protein 19
3swp_A1e-68817616174NAC domain-containing protein 19
3swp_B1e-68817616174NAC domain-containing protein 19
3swp_C1e-68817616174NAC domain-containing protein 19
3swp_D1e-68817616174NAC domain-containing protein 19
4dul_A1e-68817613171NAC domain-containing protein 19
4dul_B1e-68817613171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G171600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539409.10.0NAC domain-containing protein 2
RefseqXP_028193893.10.0NAC domain-containing protein 2-like
TrEMBLA0A0B2QU360.0A0A0B2QU36_GLYSO; NAC domain-containing protein 29
TrEMBLI1LTH10.0I1LTH1_SOYBN; Uncharacterized protein
STRINGGLYMA12G29360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-82NAC domain containing protein 25