PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G176400.3.p
Common NameGLYMA_12G176400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 791aa    MW: 86676.6 Da    PI: 7.703
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G176400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-095946311954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Glyma.12G176400.3.p 594 FEHflHPYPTDTDKHMLASQTGLSRNQVSNWFINARVR 631
                          665559******************************87 PP
2BELL82.94e-27452516472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          + q kkakLl ++ee     kqy+ q+q+v+ssFe vaglgsa+pY+ +Alk +S+hFrc k+ i+eq+
  Glyma.12G176400.3.p 452 DYQHKKAKLLYMQEEC----KQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCFKNSISEQL 516
                          789***********97....69*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-36358514IPR006563POX domain
PfamPF075262.7E-34363513IPR006563POX domain
PROSITE profilePS5007112.001572635IPR001356Homeobox domain
SMARTSM003895.0E-9575639IPR001356Homeobox domain
CDDcd000861.50E-11575636No hitNo description
SuperFamilySSF466896.42E-17577642IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27578639IPR009057Homeodomain-like
PfamPF059203.6E-18592631IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MSNLRPESHV AQQIRREKLR IQNSSQPSHE FPNNLEQLSL HPAGGFNNLD LLQVRSVRNA  60
NILDGLAVYS SEMPNFSTSS SNPNLSDARN ALEYHQEQGA AAEPSNRLMM NQYGSFPHSM  120
SAIHSSHKEH CELRNLGNWR NSAPHQGSDW FVNYASNANS FLSADLNNNV SAYNELMDVH  180
CSNASGEISG REIQKQLGVL HNNPPPSPLY QNALQDIVKS ASFSSHTRQD MSSLMQQNDH  240
SIWVGNAGEA EPQQPSYENQ PNQLHFGWTN RTIANTLSDS TPQSLSLSLS SNAQPKPSVS  300
HLEQGSASDD PQCLTNMKSI VKPSIVSRDI GKSVQETVGM PSKSTITYRS VGPLGPFTGY  360
ATILKSSRFL KSAQQLLDEI CCLSGAKFAK SYDVSKRVSP EVSASTSADT VTGVAAKGSN  420
SGSSSSILYS VSKENRADPG VRSSFGLSSR PDYQHKKAKL LYMQEECKQY HLQMQMVVSS  480
FESVAGLGSA TPYIPMALKS VSKHFRCFKN SISEQLKLIS EALGEDLSKP SNTSTCSNKA  540
DTTTTKARIR CSIDQSFLKN KSVKGTTELL EQHVWRPQRG LPERAVAILK AWLFEHFLHP  600
YPTDTDKHML ASQTGLSRNQ VSNWFINARV RVWKPMVEEI HTLETKATSS KGNCGKNEGT  660
SSGTEGDTSN PRALSNIGMN SIPENQFQGM DMGSSIIAAN AEESGLNSEQ WSQEKRSKLE  720
CQMTTSNMDG TLMGFVPYRR GGGIEVGGLG SVSLTLGLRH GVEGVQHQQQ LQEEQLRHHL  780
GGHMIHDFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15581639563Homeobox protein Meis2
3k2a_B2e-15581639563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225031e-78hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G176400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592709.10.0BEL1-like homeodomain protein 4
RefseqXP_014620473.10.0BEL1-like homeodomain protein 4
RefseqXP_025980490.10.0BEL1-like homeodomain protein 4
RefseqXP_025980491.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0R0H6P30.0A0A0R0H6P3_SOYBN; Uncharacterized protein
STRINGGLYMA12G29991.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-74BEL1-like homeodomain 8