PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G178900.1.p

Common Name

GLYMA_12G178900, Glyma12g30270.1

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 314aa MW: 33658.2 Da PI: 8.2277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G178900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Glyma.12G178900.1.p 128 YECKTCSRTFPSFQALGGHRASH 150 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	219	241	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Glyma.12G178900.1.p 219 HECSICGSEFTSGQALGGHMRRH 241 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.4E-13	127	152	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.21E-8	127	150	No hit	No description
SMART	SM00355	0.11	128	150	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	128	155	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	130	150	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.21E-8	214	241	No hit	No description
Pfam	PF13912	2.3E-11	219	243	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	219	241	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.263	219	246	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	221	241	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MLAQMDMEEL VSCNNNDATN IAKGKRTKRR LRPLSPCAVV AATTITTTTT AITAITTVMT 60 SSCSSASAGG GGSSSSTTFE EEEEDMANCL ILLAQGRVGR DPPHHHKDLC GDVKTEKGST 120 KVDHLYVYEC KTCSRTFPSF QALGGHRASH KKPKMEEKKL LSPPLLLPPL PASSSSLFNF 180 EEAKQSHMKN IISPSVSLQL GCGINKVGLN FHGNKSKIHE CSICGSEFTS GQALGGHMRR 240 HRASNNNNNI VQTTTTTTTT SNGAVDVKPR NVLELDLNLP APEDDLRDSK FQFPANPNSM 300 MLSAAPALVG CHY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.60089	0.0	cotyledon

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G178900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031150	0.0	KT031150.1 Glycine max clone HN_CCL_170 C2H2-Zn transcription factor (Glyma12g30270.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304533.2	0.0	C2H2-type zinc finger protein 3
Refseq	XP_028192885.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A0B2R6Z2	0.0	A0A0B2R6Z2_GLYSO; Zinc finger protein ZAT5
TrEMBL	I1LTN7	0.0	I1LTN7_SOYBN; C2H2-Zn transcription factor
STRING	GLYMA12G30270.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141
Representative plant	OGRP2350	10	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-54	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G178900.1.p

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]