PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G199100.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 252aa    MW: 29091.4 Da    PI: 5.3855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G199100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++l+ +++++G  +W++ ++  g+ R++k+c++rw++yl
  Glyma.12G199100.1.p 14 KGTWTPEEDKKLIAYITRYGHWNWNLLPKFAGLERCGKSCRLRWLNYL 61
                         799*****************99************************97 PP
2Myb_DNA-binding57.53.1e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T+eEde +++ v++lG++ W++Ia+ ++ gRt++++k++w++ 
  Glyma.12G199100.1.p  67 RGNYTQEEDETIIKMVQRLGNR-WSLIAAQLP-GRTDNEIKNYWHTN 111
                          899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.465961IPR017930Myb domain
SuperFamilySSF466891.15E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001676.60E-101661No hitNo description
PROSITE profilePS5129425.58762116IPR017930Myb domain
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2669115IPR009057Homeodomain-like
CDDcd001672.26E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVKNTYSDKS GHRKGTWTPE EDKKLIAYIT RYGHWNWNLL PKFAGLERCG KSCRLRWLNY  60
LRPNIKRGNY TQEEDETIIK MVQRLGNRWS LIAAQLPGRT DNEIKNYWHT NLKKKYHQQN  120
VNAETEVSKS KDHQSPDEAL PKPNNVDDVP FQNLPPTSQS TDSCTTSSII ISPTQFSITT  180
TGRSSDDSKE KFDIPYEDEF AFADVMNESF WLEPYVVDIS CYPSDVLVAE PDCFSPVPDV  240
ELWSHDHEYF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141157107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G199100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150404e-42AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539518.10.0transcription factor MYB4
TrEMBLA0A0R0H8860.0A0A0R0H886_SOYBN; Uncharacterized protein
STRINGGLYMA12G32530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.12e-52myb domain protein 53