PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G205200.1.p
Common NameGLYMA_12G205200, LOC100784042
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 223aa    MW: 25203.7 Da    PI: 5.0369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G205200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-111665455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           +++E++RR+++++ ++eL +llP+ +   p++ +s  +   +A++YIksL+
  Glyma.12G205200.1.p 16 ERKIVEKNRRSQMKNLYSELNSLLPTrN---PKEAMSLPDQIDEAINYIKSLE 65
                         5689**********************55...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-121283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.151264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-101483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-61469No hitNo description
PfamPF000107.9E-81665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00271870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGQQQQGSQP SPTKVERKIV EKNRRSQMKN LYSELNSLLP TRNPKEAMSL PDQIDEAINY  60
IKSLETKVKL EQEKKERLKE RKRTRGGCSS SSEAQGSLKS PNIQIHETGN LLEVILTCGV  120
DSQFMFCEII RILHEENVEV INANSSMVGD LVIHVVHGEV EPSIYQFGAT KVSEKLKWFM  180
NGSFSDVEME PELMWNFKID ATEPWGLLDD LTLDNVLPPN TL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.187100.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G205200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540366.11e-164transcription factor bHLH162
RefseqXP_028192548.11e-164transcription factor bHLH162-like
TrEMBLA0A445HT631e-163A0A445HT63_GLYSO; Transcription factor bHLH162
TrEMBLI1LUH41e-163I1LUH4_SOYBN; Uncharacterized protein
STRINGGLYMA12G33260.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-33bHLH family protein