PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G213900.1.p
Common NameGLYMA_12G213900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 50aa    MW: 5740.68 Da    PI: 9.9948
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G213900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-107401144
                         HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                         +lv +v+++G g+W +++++ g+ R++ +c++rw
  Glyma.12G213900.1.p  7 KLVVYVEKHGHGNWCSVPEKAGLQRCRRSCRLRW 40
                         899******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.411148IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-12646IPR009057Homeodomain-like
CDDcd001675.72E-5740No hitNo description
PfamPF002492.3E-8741IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-9747IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MEKINSKLVV YVEKHGHGNW CSVPEKAGLQ RCRRSCRLRW ISDLKPETT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G213900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362791.13e-16transcription factor MYB16-like
RefseqXP_029130541.12e-16transcription factor MYB4-like
SwissprotQ9LE631e-14MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0R0H8K31e-28A0A0R0H8K3_SOYBN; Uncharacterized protein
STRINGGLYMA01G06192.13e-15(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-17myb domain protein 106