PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G003600.1.p
Common NameGLYMA_13G003600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 114aa    MW: 12798.7 Da    PI: 7.7382
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G003600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB105.92.7e-332891265
                NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingd 65
                         reqd flPian+s imkk+lP+n ki+kdaket+qecvsefisfvt+e sdkcq ekrktin d
  Glyma.13G003600.1.p 28 REQDCFLPIANISCIMKKMLPSNRKIAKDAKETLQECVSEFISFVTCEVSDKCQGEKRKTINDD 91
                         89***********************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-292490IPR009072Histone-fold
SuperFamilySSF471134.79E-212689IPR009072Histone-fold
PfamPF008089.9E-213390IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MFNAPASPCG SGRGNHESSE HSPRSYFREQ DCFLPIANIS CIMKKMLPSN RKIAKDAKET  60
LQECVSEFIS FVTCEVSDKC QGEKRKTIND DCNRTVTVLK KEEGAFIMLF FHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-242791266NF-YB
4awl_B1e-242791367NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-242791367NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B1e-242791165Transcription factor HapC (Eurofung)
4g92_B1e-242791165Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.254784e-80stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G003600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595292.12e-72nuclear transcription factor Y subunit B
SwissprotQ8VYK49e-33NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLK7LYA19e-79K7LYA1_SOYBN; Uncharacterized protein
STRINGGLYMA13G10690.21e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2127344
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-35nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]