PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G030000.1.p

Common Name

GLYMA_13G030000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 74aa MW: 8826.68 Da PI: 10.5295

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G030000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.8	4.6e-10	3	72	2	80
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80 ++ Y + GF rk+k k+ + gei ++tfvC +egkre+ k +t ++Ckak+kv+ e w++++ Glyma.13G030000.1.p 3 YFFWYDRVKGFGPRKKKILKN-KMGEILQQTFVCFREGKREDLVKP---------KTMCKCKAKMKVHIEInLILWHISD 72 566799999******9999.6677**********998766.........899*******9887456787776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-7	3	72	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGYFFWYDRV KGFGPRKKKI LKNKMGEILQ QTFVCFREGK REDLVKPKTM CKCKAKMKVH 60 IEINLILWHI SDF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G030000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020205882.1	6e-18	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0R0GRN0	1e-46	A0A0R0GRN0_SOYBN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Link Out ? help Back to Top
Phytozome	Glyma.13G030000.1.p