PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G038100.1.p

Common Name

GLYMA_13G038100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 127aa MW: 14659.9 Da PI: 10.4103

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G038100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.5	6.3e-13	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W Ed +l ++++ +Ggg+W+++ar+ g++R++k+ ++rw++yl Glyma.13G038100.1.p 28 KGPWAVGEDTILFNYIATHGGGHWNSVARCAGLRRSGKSYRLRWLNYL 75 799*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.953	23	79	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-19	24	123	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-7	27	77	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-10	28	75	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-16	29	82	IPR009057	Homeodomain-like
CDD	cd00167	2.44E-6	30	75	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-6	83	124	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MDVKKGGSLV QMQVKLQKHN EKEMGMRKGP WAVGEDTILF NYIATHGGGH WNSVARCAGL 60 RRSGKSYRLR WLNYLRPDVW HGNVTLQEQI LILDFHCRRG NMYGGQTCQQ LLGRTDNKIK 120 NYWRIE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-13	3	123	4	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.24862	1e-139	cotyledon\| flower\| root\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G038100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536859.1	7e-67	transcription factor MYB78
Refseq	XP_028183329.1	7e-67	transcription factor MYB78-like
Swissprot	P81391	1e-39	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A445HAK6	4e-89	A0A445HAK6_GLYSO; Myb-related protein 305
TrEMBL	K7LY08	4e-89	K7LY08_SOYBN; Uncharacterized protein
STRING	GLYMA13G09083.1	7e-90	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01530.1	6e-42	myb domain protein 57

Link Out ? help Back to Top
Phytozome	Glyma.13G038100.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]