PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G046300.1.p

Common Name

GLYMA_13G046300, LOC100814175

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 289aa MW: 31337.8 Da PI: 7.9465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G046300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.2	2e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ Glyma.13G046300.1.p 4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 6*************************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ql+q+++e++l +e+ Glyma.13G046300.1.p 94 QLCQAAVEAVLKGEP 108 ******9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.9E-95	1	286	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.078	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEN 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PITSEAAANG 120 RAPPLKAYDI RHVSKDQNSA NETPKTKTRS RFKRTSGTLI KPKASKGTGF VPVEPEMANR 180 TASHESGLSH LSEATAMVEG ESKESESVVS MDTSNLIHEE PEWVAKTSDG TGESGNEIGL 240 ELTLGFEPVS RLHHVVPMKK RKIIELKSCG DSAEKDSCKM ELGLEYPA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23367	0.0	cotyledon\| root\| seed coat\| somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G046300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541285.1	0.0	LOB domain-containing protein 41
Refseq	XP_028195881.1	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-110	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A445HB36	0.0	A0A445HB36_GLYSO; LOB domain-containing protein 41
TrEMBL	I1LX21	0.0	I1LX21_SOYBN; Uncharacterized protein
STRING	GLYMA13G07590.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-105	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Glyma.13G046300.1.p
Entrez Gene	100814175