PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G047400.1.p

Common Name

GLYMA_13G047400, LOC100801549

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 420aa MW: 46564.1 Da PI: 9.5194

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G047400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	147.9	6.7e-46	102	273	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaess 78 ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++ s+ss+s+c + + Glyma.13G047400.1.p 102 PPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSkhsnnnsdegakSFSSSSDCeDGCEV 191 78************************************************************99999999999888888889533344 PP TCP 79 sssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +s+ ++++++ aak+ +k k+ +++ +++kesr+karararert++k + n+ Glyma.13G047400.1.p 192 VSEIKHKQQQlitcdaaattphnlqqgldsgdnkspttlMAAKERMKLKR----TQKEPAKMKESREKARARARERTSNKIIMCNV 273 4444444444777999999999999999876544333333333333....333456899**************9766554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	35.921	104	162	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-45	104	268	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	11.607	250	267	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MFPYSSNPSP SFPSSSSSYP PFPFLNLENA SASNTLLHDA LSVPYIPTHH NPSSIQEALN 60 NFPVTDHNCG GGGGSGSAMT KPDPNGGGAP QYGISCFLTK KPPKKDRHSK IYTSQGLRDR 120 RVRLSIEIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS 180 SSSDCEDGCE VVSEIKHKQQ QLITCDAAAT TPHNLQQGLD SGDNKSPTTL MAAKERMKLK 240 RTQKEPAKMK ESREKARARA RERTSNKIIM CNVNTNNTGG KVLQDLKKKC PAIENNHTQI 300 MHQSRSSPTH HPHHLVGNET PRDDFNVIEE SIVIKRKLKP SLMSSSDHHH HHHQNLVMPK 360 EPPSFNNNNS EYHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECINPR*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MFPYSSNPSP SFPSSSSSYP PFPFLNLENA SASNTLLHDA LSVPYIPTHH NPSSIQEALN  60
NFPVTDHNCG GGGGSGSAMT KPDPNGGGAP QYGISCFLTK KPPKKDRHSK IYTSQGLRDR  120
RVRLSIEIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS  180
SSSDCEDGCE VVSEIKHKQQ QLITCDAAAT TPHNLQQGLD SGDNKSPTTL MAAKERMKLK  240
RTQKEPAKMK ESREKARARA RERTSNKIIM CNVNTNNTGG KVLQDLKKKC PAIENNHTQI  300
MHQSRSSPTH HPHHLVGNET PRDDFNVIEE SIVIKRKLKP SLMSSSDHHH HHHQNLVMPK  360
EPPSFNNNNS EYHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECINPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G047400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541273.1	0.0	transcription factor CYCLOIDEA
Refseq	XP_006593723.1	0.0	transcription factor CYCLOIDEA
Refseq	XP_014620978.1	0.0	transcription factor CYCLOIDEA
Refseq	XP_028197082.1	0.0	transcription factor CYCLOIDEA-like
Refseq	XP_028197083.1	0.0	transcription factor CYCLOIDEA-like
TrEMBL	A0A445HB77	0.0	A0A445HB77_GLYSO; Transcription factor TCP1
TrEMBL	K7LXS7	0.0	K7LXS7_SOYBN; Uncharacterized protein
STRING	GLYMA13G07475.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-29	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G047400.1.p
Entrez Gene	100801549

Publications ? help Back to Top
Wang S, et al. A Rare SNP Identified a TCP Transcription Factor Essential for Tendril Development in Cucumber. Mol Plant, 2015. 8(12): p. 1795-808 [PMID:26597500]