PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G073300.1.p
Common NameGLYMA_13G073300, LOC102664324
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 491aa    MW: 54042.4 Da    PI: 8.0164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G073300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000473354223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C++Cgk+Fs+   L  H r+H
  Glyma.13G073300.1.p 33 ECNICGKVFSSGKALGGHRRSH 54
                         5*******************99 PP
2zf-C2H216.32.8e-0597117323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C +C+k F++k  L  H+r+H
  Glyma.13G073300.1.p  97 CCICKKEFPTKNALFGHMRSH 117
                          ********************9 PP
3zf-C2H211.30.0011383405123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ Cgk Fs+   L  H ++H
  Glyma.13G073300.1.p 383 YKCGACGKKFSTFQGLGGHRSVH 405
                          9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.23254IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-103254IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6993259IPR007087Zinc finger, C2H2
SuperFamilySSF576676.17E-53358No hitNo description
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SMARTSM003550.02195117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.66395117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-796117No hitNo description
PfamPF139122.6E-696119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-7378405No hitNo description
SMARTSM003550.36383405IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385383410IPR007087Zinc finger, C2H2
PfamPF139121.2E-4383407IPR007087Zinc finger, C2H2
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKRSLLGPCK AEVESTTADE ATAAKSPSPM LRECNICGKV FSSGKALGGH RRSHFQKHQK  60
KVKVRFTNHS SKAGDSSNIN RANNCDYDAD DDGKRICCIC KKEFPTKNAL FGHMRSHPER  120
SWKGVSPPTR SPNKNSSSSS LSSYTFSSQN SDSMEKNMEE YRDDDYVDCV GGGGGNIVII  180
DLSTFTSPSW LKTDVRGRKC IGAYEAAETL TYLSAYSKYF CSESNRVSPK KDEVLSKSAP  240
PLIKNGKRKV GESSSSKKHK VKKIKFYLNG ELKIGKKNDG DGEFDDDEGE KLNRCKGLSK  300
SGVGRILYMD DEVEEEEGVD EAFDDVITEV VAPAKVQDHV DERKVKRVVD HKGKNSKKLV  360
MKFKAKDTEY ENGGQEKEKV GGYKCGACGK KFSTFQGLGG HRSVHKEKNT EIMDESNRSK  420
AVVADQEDNS SSSSNMHKVD EATMNEAPLP TDETTANEKA PLLADEACQS SPCTKKLDFD  480
LNELPCGMKD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G073300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595238.10.0uncharacterized protein LOC102664324
TrEMBLK7LXA20.0K7LXA2_SOYBN; Uncharacterized protein
STRINGGLYMA13G04041.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Representative plantOGRP1249135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.19e-15C2H2 family protein