PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G105700.1.p
Common NameGLYMA_13G105700, LOC100818430
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 409aa    MW: 46778.7 Da    PI: 6.2733
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G105700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.5e-36751662102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk++e++ed++++ ++sws++ +sf+v+d++ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv++++         weF+++ F+ gkk
  Glyma.13G105700.1.p  75 FLKKTFEMVEDPHTDPIVSWSQTRDSFIVWDSHEFSKSLLPKYFKHSNFSSFVRQLNTYGFRKVDSDR---------WEFANEGFQGGKK 155
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+ +
  Glyma.13G105700.1.p 156 HLLKNIRRRCK 166
                          ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-3471164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5971164IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3871164IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-3275164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-197598IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-19113125IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340114138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-19126138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGEEEVTRVK AELFQDSEGD PHDDVLSESK DSGVTTEEVT MTTHVVKEEI DDGAVNGSSS  60
PKPMEGLHEV GPPPFLKKTF EMVEDPHTDP IVSWSQTRDS FIVWDSHEFS KSLLPKYFKH  120
SNFSSFVRQL NTYGFRKVDS DRWEFANEGF QGGKKHLLKN IRRRCKYNKL HQGAFNMMKP  180
CVDSEVEKLK KDQNILKVEI LKLRQQQENS HVQLTNVQER IRCAEVKQYQ MMYFLTRMAR  240
RPAFVEQLVH KIRRKREIDG NEMVKRPRLM GTPCHVPFPK TMETTPDFDH RHQQGHKQFA  300
TLQSELNGLL SETVNTGRME HPTPSPLEDE LCSSLQGLRA HGISRASAQD ASSSAYHVMS  360
EKLMRENSIV DEELDVNDSN IYLELEDLIT KPTDWSVGSA SGLVEQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23401642129Heat shock factor protein 1
5d5v_B2e-23401642129Heat shock factor protein 1
5d5v_D2e-23401642129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.371210.0leaf| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G105700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541290.10.0heat stress transcription factor A-2
RefseqXP_028196989.10.0heat stress transcription factor A-2-like
TrEMBLA0A0B2PBI10.0A0A0B2PBI1_GLYSO; Heat stress transcription factor A-2
TrEMBLI1LY110.0I1LY11_SOYBN; Uncharacterized protein
STRINGGLYMA13G16510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Representative plantOGRP1180756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-82heat shock transcription factor A2