PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G112400.1.p
Common NameGLYMA_13G112400, LOC100804384
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 200aa    MW: 21987.4 Da    PI: 4.893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G112400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-191967355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr +k +g+Wv+eIr p++   r+r++lg+f+t+e+Aa+a +aa+ +l+g
  Glyma.13G112400.1.p 19 YKGVRKRK-WGKWVSEIRLPNS---RQRIWLGSFDTPEKAARAFDAAMFCLRG 67
                         9****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-211877IPR016177DNA-binding domain
SMARTSM003804.9E-331881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-301876IPR001471AP2/ERF domain
PROSITE profilePS5103222.3921875IPR001471AP2/ERF domain
PfamPF008479.3E-121967IPR001471AP2/ERF domain
PRINTSPR003675.7E-101930IPR001471AP2/ERF domain
CDDcd000181.13E-311977No hitNo description
PRINTSPR003675.7E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MMVKPSSEKP EEHRDSKYYK GVRKRKWGKW VSEIRLPNSR QRIWLGSFDT PEKAARAFDA  60
AMFCLRGRNA KFNFPDNPPD IAGGESMTPS QIQVAAAQFA NAGPHEGHSG RPEHSPMQSL  120
SPSVSEGTVL TDSDVTTLNG SLTDLFTPVG SSGYASDYGI FPGVDDFSGG FYVPEMLNFN  180
YGEENGEGFI VDESFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1519751572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.416280.0flower| leaf| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G112400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2089690.0DQ208969.1 Glycine max dehydration-responsive element binding protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542371.31e-147ethylene-responsive transcription factor ERF017
SwissprotQ84QC25e-55ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLI1LY831e-146I1LY83_SOYBN; Uncharacterized protein
STRINGGLYMA13G17250.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]