PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G121000.1.p
Common NameGLYMA_13G121000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 232aa    MW: 26611.4 Da    PI: 6.1602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G121000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000273355123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C  C++ F++   L  H++ H
  Glyma.13G121000.1.p 33 YECVFCKRGFTTAQALGGHMNIH 55
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.25E-63159No hitNo description
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEFGYQEDSS KSSSDEIDRS SEQNDETGIG RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
NNKAKPNFPP SSSSKVVDES NNYANPSYLT RGNYYSSTLP DHREVDVNYS YYHQLYFPSH  120
ACGAKSPSHV QYSSEVLCVE NQRDPHLLFG QDWRQRGLSL YTNPLCVYEN KDKIENNSEE  180
DDLDLELRLG LYIFYGGQLY REMSCKLEAE RSKISIAWRL LQGKVARSCF W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.143091e-168root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G121000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150415e-44AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595353.11e-140transcriptional regulator SUPERMAN
RefseqXP_028197015.11e-140transcriptional regulator SUPERMAN-like
TrEMBLK7LZ951e-173K7LZ95_SOYBN; Uncharacterized protein
STRINGGLYMA13G18161.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.18e-14C2H2 family protein