PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G144100.1.p
Common NameGLYMA_13G144100, LOC100811316
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 186aa    MW: 19615.3 Da    PI: 7.5646
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G144100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.9e-3435108278
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaess 78 
                           +k+ +++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+++i+++tg+++ +a  +   ss
  Glyma.13G144100.1.p  35 VAKRPSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAETSIIAATGSGTVPAAPV---SS 108
                          5799************************************************************88777333...22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2840115IPR005333Transcription factor, TCP
PROSITE profilePS5136926.5524195IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTSQVVLHNN FETKPSATVT TIVESPSVAP PSLAVAKRPS TKDRHTKVNG RGRRVRMPPL  60
CAARIFQLTR ELGHRSDGET IEWLLRHAET SIIAATGSGT VPAAPVSSVG PSAPSSEPMV  120
ACPVTAVGAQ GMFAVPPQPS CRLDLSPPPG MEFAVNGYRH MPFTALLLQP ATADENQNDE  180
SLGEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G144100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541424.11e-133transcription factor TCP11
RefseqXP_028196567.11e-133transcription factor TCP11-like
SwissprotQ9SJK75e-44TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A445HFT41e-132A0A445HFT4_GLYSO; Transcription factor TCP11
TrEMBLK7LZR41e-132K7LZR4_SOYBN; Uncharacterized protein
STRINGGLYMA13G20710.21e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.13e-46TCP family protein