PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G145800.1.p
Common NameGLYMA_13G145800, LOC100814530
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 230aa    MW: 26874.7 Da    PI: 5.0741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G145800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-15855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W +eEde+l   v++lG ++W++ a+  g++R++k+c++rw +yl
  Glyma.13G145800.1.p  8 KGTWLQEEDEQLTSFVARLGERRWDSLAKVAGLKRSGKSCRLRWMNYL 55
                         799*******************************************97 PP
2Myb_DNA-binding54.62.5e-1762106248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g ++ eE++l+v++ ++lG++ W++Iar+++ gRt++++k++w ++l
  Glyma.13G145800.1.p  62 GHFSVEEEQLIVQLQQELGNK-WAKIARKLP-GRTDNEIKNYWKTHL 106
                          6799*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.949355IPR017930Myb domain
SuperFamilySSF466891.48E-275102IPR009057Homeodomain-like
SMARTSM007172.5E-13757IPR001005SANT/Myb domain
PfamPF002491.9E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20962IPR009057Homeodomain-like
CDDcd001671.73E-81055No hitNo description
PROSITE profilePS5129426.83656110IPR017930Myb domain
SMARTSM007171.4E-1660108IPR001005SANT/Myb domain
PfamPF002491.6E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2563109IPR009057Homeodomain-like
CDDcd001679.55E-1164106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQGENLRKGT WLQEEDEQLT SFVARLGERR WDSLAKVAGL KRSGKSCRLR WMNYLRPNLK  60
HGHFSVEEEQ LIVQLQQELG NKWAKIARKL PGRTDNEIKN YWKTHLRKRA QAQQGDFKYK  120
LEIATQEVNQ KSIDMDSKNC KHGNVWCQDS EWETKDSSST DTLSLSDWEL RSSPYETRIL  180
DWIAELQNGY GENELEQDCN STGTCNYYPQ EFDEGCDSWD YSGSLWDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2561102105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-25611056159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-25611056159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-25611025128MYB TRANSFORMING PROTEIN
1mse_C1e-2561102105C-Myb DNA-Binding Domain
1msf_C1e-2561102105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G145800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541429.11e-170transcription factor MYB27
TrEMBLA0A445HG151e-169A0A445HG15_GLYSO; Transcription factor MYB27
TrEMBLK7LZS81e-169K7LZS8_SOYBN; Uncharacterized protein
STRINGGLYMA13G20880.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.17e-51myb domain protein 27