PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G149500.1.p
Common NameGLYMA_13G149500, LOC100778007
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25898.1 Da    PI: 8.4147
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G149500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1956110357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  Glyma.13G149500.1.p  56 KKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 110
                          56779************************************************95 PP
2HD-ZIP_I/II117.38.8e-3855147193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L++ 
  Glyma.13G149500.1.p  55 EKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKTM 144
                          69**************************************************************************************88 PP

          HD-ZIP_I/II  91 lke 93 
                          l+e
  Glyma.13G149500.1.p 145 LRE 147
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-1944113IPR009057Homeodomain-like
PROSITE profilePS5007117.15151111IPR001356Homeobox domain
SMARTSM003898.7E-1954115IPR001356Homeobox domain
PfamPF000461.1E-1656110IPR001356Homeobox domain
CDDcd000866.53E-1656112No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2157119IPR009057Homeodomain-like
PRINTSPR000313.4E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000313.4E-591107IPR000047Helix-turn-helix motif
PfamPF021832.0E-7111145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEWNGSTRRY VPRADSSLSF LYNYNYTPYP GMEVKQQALA ETSSPMEKMN CGNQEKKKRL  60
TSDQLDSLEN SFQKEIKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKN KQLEHLYDSL  120
KQEFDVISKE KQKLEEEVMK LKTMLREQAS RTQQVSTGYT EISGEETVES TSEALRCSKR  180
GTLHHQQQQN NIGEGNCSFT LEDYNTVPVL PYWPGVPYYH P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKNKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G149500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980090.0BT098009.1 Soybean clone JCVI-FLGm-11N12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542577.11e-166putative homeobox-leucine zipper protein ATHB-51 isoform X1
RefseqXP_028195752.11e-166putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-51ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A445HGH11e-165A0A445HGH1_GLYSO; Putative homeobox-leucine zipper protein ATHB-51 isoform A
TrEMBLI1LZD71e-165I1LZD7_SOYBN; Uncharacterized protein
STRINGGLYMA13G21330.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-54homeobox 51
Publications ? help Back to Top
  1. Zhao JL, et al.
    Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus.
    J Integr Plant Biol, 2015. 57(11): p. 925-35
    [PMID:25735194]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]