PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G149700.1.p
Common NameGLYMA_13G149700, LOC100816661
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 470aa    MW: 54024.6 Da    PI: 6.4786
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G149700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.88.3e-25104200186
             trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                          +Wt+ +v++Li a+ +++++ +++           +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ 
  Glyma.13G149700.1.p 104 KWTDTMVRLLIMAVYYIGDEAGSEGtdkkkssglmQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVVENQ 193
                          7**************99888886433456778888**********************************************669****** PP

             trihelix  80 pyfdqle 86 
                          +++d+++
  Glyma.13G149700.1.p 194 SLLDSMD 200
                          ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-22102225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MFSGLVGVEN PLQQQQQQQQ QQQQQQQQNL HHLQHHHPQM VPYATHHDTE NPHHPHLHQS  60
IKQGYPPFSS QTKQQQSPLS DDDEPGFPAD EDPKRKVSPW QRMKWTDTMV RLLIMAVYYI  120
GDEAGSEGTD KKKSSGLMQK KGKWKSVSRA MMEKGFYVSP QQCEDKFNDL NKRYKRVNDI  180
LGKGTSCRVV ENQSLLDSMD LSPKMKEEVK KLLNSKHLFF REMCAYHNSC GHGNNNAPQQ  240
GESGGEVSQP QAQPHHHQQQ QQQPQQRCFH SSEVGNLGGS GVEGLRMLKV GNGEEGDDDS  300
EDDDDSEDDS DEDEDDSGEG GSRGHVGHGH EDIEDENDGR SMRKRARKVG GVSMSPQLMQ  360
QLSAEVSGVF QDVGKSAWDK KQWMRSRIMQ LEEQQISYHT QAFELEKQRL KWARFSSKKE  420
REMETAKLEN ERRRLENERM VLLIRQKEFE LMSLQHQQQQ QHQQQHSST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.347370.0pod| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G149700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3503280.0AF350328.1 Glycine max SHOOT2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542565.10.0putative mediator of RNA polymerase II transcription subunit 26 isoform X1
RefseqXP_006594181.10.0putative mediator of RNA polymerase II transcription subunit 26 isoform X2
TrEMBLI1LZE00.0I1LZE0_SOYBN; Uncharacterized protein
STRINGGLYMA13G21350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-72sequence-specific DNA binding transcription factors