PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G178800.1.p
Common NameGLYMA_13G178800, LOC100789728
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 174aa    MW: 19892.7 Da    PI: 9.7335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G178800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-111061255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         r+  + +E++RR+++++ f++L +++P++   +s+   s  +   +A++YIk+Lq
  Glyma.13G178800.1.p 10 RTDRKFIEQNRRNHLKDLFFKLNSVVPHQ---SSREaISRPDQIGEATNYIKNLQ 61
                         6777889*********************8...56666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-5665No hitNo description
SuperFamilySSF474591.96E-12674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.086860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-71061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-111074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00111466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MENNPSSSSR TDRKFIEQNR RNHLKDLFFK LNSVVPHQSS REAISRPDQI GEATNYIKNL  60
QIKLEKMKEK KNNLIDIKRS KNVSMNMGLL KSPQFKIQQM GSTLEVFLIT GLDCQFMFNE  120
TVRVLQEEGS DVVNASYTVV ENEVFHTIHC HQVGESANGA LRISEKLKKY FNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G178800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541532.11e-126transcription factor bHLH162
TrEMBLK7M0D31e-125K7M0D3_SOYBN; Uncharacterized protein
STRINGGLYMA13G24730.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-34bHLH family protein