PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G195800.1.p

Common Name

GLYMA_13G195800, LOC100784245

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 327aa MW: 36576.1 Da PI: 8.986

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G195800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.3e-16	49	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k e+++kry+ + +++ ss++p++++l+ Glyma.13G195800.1.p 49 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTSTQCKNKVESMKKRYRSESATADHA----SSSWPLYSRLD 134 5***********************************85545555566678***************9974....778***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-20	47	134	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGVDDEQEME EEEEEEREEE KKKHKQAPPS LFPISVRKGF SGERVKRDEW SEGAVSTLLE 60 AYEAKWVLRN RAKLKGHDWE DVARHVSSRA NCTKSPKTST QCKNKVESMK KRYRSESATA 120 DHASSSWPLY SRLDLLLRGT GPVFSSPPGP LMVAAPMPPL SPVEPSQPLA PSGPLANAQN 180 SHGSNGVDEK LAKEDGLGTK SSDQVSSKNP LDTDSSTPAL YSQKEELRSN KRKKKTIDHN 240 TGRRRKEYVE IAESLRWLAE AMIRSEQARM DTMKEIERMR VEAEAKRGEM DLKRTEIIAN 300 TQLEIARIFA SVNSKGVDSS LRIGRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	245	RKKKTIDHNTGRRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.24036	0.0	root\| somatic embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G195800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160455	0.0	AC160455.26 Glycine max cultivar Williams 82 clone gmw2-10n21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541588.1	0.0	trihelix transcription factor ASIL1
TrEMBL	I1M0R0	0.0	I1M0R0_SOYBN; Uncharacterized protein
STRING	GLYMA13G26550.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50
Representative plant	OGRP4409	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-105	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Glyma.13G195800.1.p
Entrez Gene	100784245