PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G203700.2.p

Common Name

GLYMA_13G203700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 327aa MW: 36431.4 Da PI: 7.6913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G203700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.5e-07	165	184	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Glyma.13G203700.2.p 165 FPCPVCSKTFNRYNNLQMHM 184 89*****************9 PP
2	zf-C2H2	15.5	4.9e-05	249	271	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F k + ++H +++ Glyma.13G203700.2.p 249 YMCRKCGKAFAVKGDWRTHEKNC 271 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.61E-6	161	187	No hit	No description
SMART	SM00355	0.034	165	187	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-6	165	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.7E-5	165	184	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.616	165	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.01E-7	233	269	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-6	245	269	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	40	249	269	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	249	269	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MNGSTSCSSI LTTPPLLNPI TLLLIITQTT TAPPSSPPLR VALPLINKIS LKSSEQHQQN 60 ETSSNVLEEK EEDEKKVDNN NKHHESGEDA DEETVTVALH IGLPRMDTSS SSDLGPPKVV 120 STTCMEIGEK GEVNMISEHP LDHRLNKGQY WIPTPSQILI GPTQFPCPVC SKTFNRYNNL 180 QMHMWGHGSQ YRKGPDSLKG TQPTAMLRLP CFCCAPGCKH NIDHPRARPL KDFRTLQTHY 240 KRKHGIKPYM CRKCGKAFAV KGDWRTHEKN CGKIWYCLCG SDFKHKRSLK DHIKAFGFGH 300 GSFGIDCLQE EDEAASDIEH DGESSM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G203700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541613.1	0.0	zinc finger protein WIP2
Refseq	XP_028189063.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-118	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0R0GRH6	0.0	A0A0R0GRH6_SOYBN; Uncharacterized protein
STRING	GLYMA13G27371.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-120	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G203700.2.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]