PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G207500.1.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 244aa MW: 27208.9 Da PI: 7.2708

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G207500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	131.2	3.3e-41	61	161	1	98
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql +fw+k+ ie++t fk h+lPlarikki+k +e v+m+saea v+++kace+f++elt+r+ aeen+r+ +kk+d+a+a++rtd Glyma.13G207500.1.p 61 QLTNFWAKKrqeIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTD 150 799*9877789************************************************************************* PP NF-YC 88 ifdflvdivpr 98 +fdflvdiv Glyma.13G207500.1.p 151 VFDFLVDIVSG 161 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.42E-26	67	155	IPR009072	Histone-fold
Pfam	PF00808	1.0E-16	83	146	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.5E-28	84	160	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDQNQHDRLA QEAQYQSNPM MAPTILPTQT YGHSLSSSYP RLHPYDPQAM YQLRQEPLQQ 60 QLTNFWAKKR QEIEETTSFK THSLPLARIK KIMKGEEGVR MVSAEASVVF AKACEMFMME 120 LTIRASGSAE ENQRKIIKKC DVASAISRTD VFDFLVDIVS GHNKIMEQQG FVGIPRIGTA 180 LTPTENVPYY QMPPHQSLVP GPPYGSSGMV VGMPVHYQNH PGLQTPTMGP TPNPQNSSRD 240 SDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-40	71	159	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G207500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014621214.1	0.0	nuclear transcription factor Y subunit C-3
Refseq	XP_028187172.1	0.0	nuclear transcription factor Y subunit C-3-like
TrEMBL	A0A445I7Q6	0.0	A0A445I7Q6_GLYSO; Nuclear transcription factor Y subunit C-3
TrEMBL	I1M133	0.0	I1M133_SOYBN; Uncharacterized protein
STRING	GLYMA13G27770.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22394	2	4
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	3e-49	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	Glyma.13G207500.1.p