PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G225700.1.p
Common NameGLYMA_13G225700, LOC100820566
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 393aa    MW: 44933.8 Da    PI: 4.628
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G225700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.2e-36151062102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d+++++++sws++++sf+v+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ 
  Glyma.13G225700.1.p  15 FLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQP 95 
                          9********************999****************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Glyma.13G225700.1.p  96 HLLKNIHRRKP 106
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-39499IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.33E-3610104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6311104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMEEAQGSSS SLPPFLTKIY EMVDDPSTNS IVSWSATNRS FIVWNPPEFS RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKIDP EQWEFANDDF VRGQPHLLKN IHRRKPVHSH SLQNIQGQGV  120
SSLTESERQS FKDEIEKLKH EKEQLLRELE MHEQEWKMYE VQLQHSNDRL EKLEKKQENL  180
VSSVSQVLQK PGIALNLLLL TENMDRKRRL PRSGLFSDDA SIEDHMETSQ VLPRENADGA  240
SIFSSSTERL DLLESSMTFW ENITHDVGDV FVQSHLNLDF DESTSCADSP AISCVQLEVE  300
DQPKSHGINV SSEPAVVAAP DLDASKEQPV ETAPLTTGVN DIFWERFLTE NPGSSEMQEA  360
QSEREDSDGR SNAKFWWNIR NVNNPPEQMG HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-261010415120Heat shock factor protein 1
5d5u_B7e-261010424129Heat shock factor protein 1
5d5v_B7e-261010424129Heat shock factor protein 1
5d5v_D7e-261010424129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.208770.0leaf| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G225700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340391.10.0heat stress transcription factor 29
RefseqXP_028191561.10.0heat stress transcription factor A-4a-like
SwissprotO494031e-123HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A445I8H40.0A0A445I8H4_GLYSO; Heat stress transcription factor A-4a
TrEMBLI1M1P70.0I1M1P7_SOYBN; Uncharacterized protein
STRINGGLYMA13G29760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-125heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]