PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G226800.1.p
Common NameGLYMA_13G226800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 236aa    MW: 27257.5 Da    PI: 10.2197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G226800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08901171847
                          HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  18 qlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +l ++ W++I  +++ gRt++++k++w++y
  Glyma.13G226800.1.p  90 KLKKR-WSLIVGRLP-GRTPNDVKNYWNTY 117
                          67777.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.28175122IPR017930Myb domain
PfamPF002492.6E-690117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-1190124IPR009057Homeodomain-like
SuperFamilySSF466893.74E-791123IPR009057Homeodomain-like
CDDcd001673.12E-592118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MIKTYPWTLK IIDKERIRII NREHETSSGI VLAYAPPTLF YGISKIWCDY YLLYIGLLYY  60
NMIALDRISA KNINQRELKR SKFNILQESK LKKRWSLIVG RLPGRTPNDV KNYWNTYIRR  120
KVSSSHKVVI NEKQEKTTVK PHVVIKPKAR TFSRPSPSGL RGSNVLREEG GESGAKHCST  180
HHQACAASSE CINNWSTDQW WKTMMHDKGD NLDNNQCLLA YQDEVGKLKF IILLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G226800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0902991e-180BT090299.1 Soybean clone JCVI-FLGm-4K7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541690.11e-103transcription factor MYB111
RefseqXP_028186595.11e-103transcription factor MYB111-like
TrEMBLK7M1881e-175K7M188_SOYBN; Uncharacterized protein
STRINGGLYMA13G29891.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1672278
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-11myb domain protein 6