PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G253500.1.p
Common NameGLYMA_13G253500, LOC100798018
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 377aa    MW: 42657.8 Da    PI: 7.5969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G253500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12199246355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +A++Y+k++q
  Glyma.13G253500.1.p 199 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 246
                          5799************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10200246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16200260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-12201250No hitNo description
SMARTSM003534.1E-14202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MIDFNACTWD VVLFDILIRL IASAVFHFMR TSHMEISSIR GLPEMGIIED PNFLHHWQLN  60
SIDTTSLTGA PFGEILQKHS FSDNSNFNPK TSMETSPTGI ERPAKQLRNN SWNHNKSQQQ  120
TPETQFASCS NLLSFVNSNY TSELGLVKPK VEMVCPKINN NTLADMLISQ GNLGNQNYLF  180
KASQEAKKIE TRPKLSQPQD HIIAERKRRE KLSQRFIALS ALVPGLKKMD KASVLGEAIK  240
YLKQMQEKVS ALEEEQNRKR TVESVVIVKK SRLSSDAEDS SSSETGDTFD EALPEIEARF  300
YERNVLIRIH CEKNKGVIEK TISEIEKLHL KVINSSALTF GSFILDITII AQMDMEFCMT  360
VKDLVRSLRS AFSYFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14197256564Transcription factor MYC2
5gnj_B2e-14197256564Transcription factor MYC2
5gnj_E2e-14197256564Transcription factor MYC2
5gnj_F2e-14197256564Transcription factor MYC2
5gnj_G2e-14197256564Transcription factor MYC2
5gnj_I2e-14197256564Transcription factor MYC2
5gnj_M2e-14197256564Transcription factor MYC2
5gnj_N2e-14197256564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRE
2205210RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G253500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543116.20.0transcription factor bHLH25 isoform X1
RefseqXP_028188162.10.0transcription factor bHLH25-like isoform X1
TrEMBLI1M2I90.0I1M2I9_SOYBN; Uncharacterized protein
STRINGGLYMA13G32650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-60bHLH family protein