PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G253500.3.p
Common NameGLYMA_13G253500, LOC100798018
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 349aa    MW: 39404.9 Da    PI: 8.3231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G253500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12171218355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +A++Y+k++q
  Glyma.13G253500.3.p 171 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 218
                          5799************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16172232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-11173222No hitNo description
SMARTSM003534.1E-14174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRTSHMEISS IRGLPEMGII EDPNFLHHWQ LNSIDTTSLT GAPFGEILQK HSFSDNSNFN  60
PKTSMETSPT GIERPAKQLR NNSWNHNKSQ QQTPETQFAS CSNLLSFVNS NYTSELGLVK  120
PKVEMVCPKI NNNTLADMLI SQGNLGNQNY LFKASQEAKK IETRPKLSQP QDHIIAERKR  180
REKLSQRFIA LSALVPGLKK MDKASVLGEA IKYLKQMQEK VSALEEEQNR KRTVESVVIV  240
KKSRLSSDAE DSSSSETGDT FDEALPEIEA RFYERNVLIR IHCEKNKGVI EKTISEIEKL  300
HLKVINSSAL TFGSFILDIT IIAQMDMEFC MTVKDLVRSL RSAFSYFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14169228564Transcription factor MYC2
5gnj_B2e-14169228564Transcription factor MYC2
5gnj_E2e-14169228564Transcription factor MYC2
5gnj_F2e-14169228564Transcription factor MYC2
5gnj_G2e-14169228564Transcription factor MYC2
5gnj_I2e-14169228564Transcription factor MYC2
5gnj_M2e-14169228564Transcription factor MYC2
5gnj_N2e-14169228564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G253500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594659.10.0transcription factor bHLH25 isoform X2
RefseqXP_028188163.10.0transcription factor bHLH25-like isoform X2
SwissprotQ9T0722e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A445I9U00.0A0A445I9U0_GLYSO; Transcription factor bHLH25 isoform B
TrEMBLI1M2J00.0I1M2J0_SOYBN; Uncharacterized protein
STRINGGLYMA13G32650.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-61bHLH family protein