PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G255200.2.p
Common NameLOC100805092
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27817.7 Da    PI: 9.5333
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G255200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
  Glyma.13G255200.2.p 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 59
                         8***********************************************86 PP
2K-box88.51.3e-2981171999
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          + +++++ +q+e+a L+++++ Lq+ +R+l+Ge+L+ L +keLq+Le+qLe slk +R kK+++l+++i+el++k + +++en +L +k+
  Glyma.13G255200.2.p  81 NPASEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTNEIKELRQKGNIIHQENVELYQKM 170
                          5678899*********************************************************************************98 PP

                K-box  99 e 99 
                          e
  Glyma.13G255200.2.p 171 E 171
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.64E-44277No hitNo description
SuperFamilySSF554551.1E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.03986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLMVFSS TGKLYDYAST  60
SMKAVIERYN KLKEETHHLM NPASEEKFWQ TEAASLRQQL QYLQECHRQL MGEELTGLGI  120
KELQNLENQL EMSLKGVRMK KDQILTNEIK ELRQKGNIIH QENVELYQKM EQIQKENAEL  180
QKKVYEARST NEENVASNPS YNVRNGYDSL ASISLQLSQP QSQYKYSEPS TKAMKLGLQL  240
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-22174174MEF2C
5f28_B8e-22174174MEF2C
5f28_C8e-22174174MEF2C
5f28_D8e-22174174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.67410.0flower| meristem| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Function -- GeneRIF ? help Back to Top
  1. Study describes molecular cloning and characterization of NMHC5 gene coding for a MADS-Box transcription factor which seems to promote root development and nodulation in Soybean. [NMHC5]
    [PMID: 26404246]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G255200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968100.0BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241489.11e-178MADS-box transcription factor NMHC5
RefseqXP_028187092.11e-178MADS-box transcription factor 23-like isoform X6
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A445I9Y81e-176A0A445I9Y8_GLYSO; MADS-box transcription factor 27 isoform A
TrEMBLC6TGQ71e-176C6TGQ7_SOYBN; Uncharacterized protein
STRINGGLYMA13G32810.11e-174(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-93AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Liu W, et al.
    A Novel Sucrose-Regulatory MADS-Box Transcription Factor GmNMHC5 Promotes Root Development and Nodulation in Soybean (Glycine max [L.] Merr.).
    Int J Mol Sci, 2015. 16(9): p. 20657-73
    [PMID:26404246]