PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G257000.1.p
Common NameGLYMA_13G257000, LOC100810422
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23644.1 Da    PI: 9.7092
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G257000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.8e-26959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n   rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs+t kl+ey+s
  Glyma.13G257000.1.p  9 KKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSTTSKLFEYAS 59
                         689**********************************************86 PP
2K-box37.97.3e-14941692398
                K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           L+keie   +e  +l Ge+++ L++keLq++e+ L++  ++i + K+e ++++i++l+ ke +l een++L++ +
  Glyma.13G257000.1.p  94 ILRKEIEHKTNEMSQLNGEEIQGLTIKELQKVEELLQRRWTTISKIKDEKIIQEINHLKTKEAKLMEENQKLKQSF 169
                          5899999999**************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.749161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-30176IPR002100Transcription factor, MADS-box
CDDcd002651.10E-35274No hitNo description
PRINTSPR004043.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.51985176IPR002487Transcription factor, K-box
PfamPF014863.8E-1294168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARKKIPIKK IDNINARQVT FSKRRKGLFK KAQELSTLCD AEIALIVFST TSKLFEYASS  60
SMQQILERRD RHSGIQGLVN PSIGQQLGSD SLGILRKEIE HKTNEMSQLN GEEIQGLTIK  120
ELQKVEELLQ RRWTTISKIK DEKIIQEINH LKTKEAKLME ENQKLKQSFV REQRQPYESF  180
TCSSSEFPPD CGNSDTSLKL GLSLFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20166166MEF2C
5f28_B2e-20166166MEF2C
5f28_C2e-20166166MEF2C
5f28_D2e-20166166MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G257000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150386e-68AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543140.11e-149MADS-box protein JOINTLESS isoform X2
RefseqXP_028188421.11e-149MADS-box protein JOINTLESS-like isoform X2
SwissprotQ9FUY62e-58JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A445IA131e-147A0A445IA13_GLYSO; MADS-box protein JOINTLESS isoform B
TrEMBLK7M1W41e-147K7M1W4_SOYBN; Uncharacterized protein
STRINGGLYMA13G33051.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]