PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G285400.1.p
Common NameGLYMA_13G285400, LOC100799073
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 578aa    MW: 64476.9 Da    PI: 5.4658
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G285400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.13.4e-1312065751373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+s+++++  ++l+ + ++ +s +g+p+qRl ay++e+L ar++ s++++y+al+++e +    +e l++++l++e++P+
  Glyma.13G285400.1.p 206 LKQLLIACAKALSENNTKDFDQLVGKAKDAVSINGEPIQRLGAYMVEGLVARMQASGNSIYHALRCREPE---GEELLTYMQLLFEICPY 292
                          689******************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI +a  +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +g+rLa + e++g+p+ef
  Glyma.13G285400.1.p 293 LKFGYMAANGAIAQACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEVVGKRLALMSEKFGIPVEF 382
                          ************************************************************999999************************ PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v     +++ e+L+++pgEalaVn+ lqlh++ desv+++++rd +L+lv+slsPkv ++veqe+++n+++F++rf+e+l+yy a+f
  Glyma.13G285400.1.p 383 HG-VPVFAPNVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIF 471
                          **.6888999******************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+s+eri+vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++ll  ++ + y++ e++g++
  Glyma.13G285400.1.p 472 ESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLMCYS-EHYTLVEKDGAM 560
                          *************************************************************************8777.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWkdr+L+s+SaW
  Glyma.13G285400.1.p 561 LLGWKDRNLISASAW 575
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.112180557IPR005202Transcription factor GRAS
PfamPF035141.2E-128206575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MPSSFSMDSQ QLFSFELPYM SSLPTVPSLL GSLKYDTGNS PNSPFSTYFD SDTLSALSDG  60
QEQYSPGEIL SGVSPSCNSS LETNHYMYRS VSTLDSFPLY SDRNSLLQTM SSNQKIQHAL  120
LELETALMAP DDDQVNTPNT LAESSRPMAS GQRSRSWSNE NHVSQYTQTQ PSYATANMQS  180
SEVVHVEKRQ KLMEEATLQD FPPNNLKQLL IACAKALSEN NTKDFDQLVG KAKDAVSING  240
EPIQRLGAYM VEGLVARMQA SGNSIYHALR CREPEGEELL TYMQLLFEIC PYLKFGYMAA  300
NGAIAQACRN EDHIHIIDFQ IAQGTQWMTL LQALAARPGG APHVRITGID DPVSKYARGD  360
GLEVVGKRLA LMSEKFGIPV EFHGVPVFAP NVTREMLDIR PGEALAVNFP LQLHHTADES  420
VHVSNPRDGL LRLVRSLSPK VTTLVEQESN TNTTPFFNRF IETLDYYLAI FESIDVTLPR  480
DSKERINVEQ HCLARDIVNI IACEGKERVE RHELFGKWKS RLTMAGFRQC PLSSYVNSVI  540
RSLLMCYSEH YTLVEKDGAM LLGWKDRNLI SASAWHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6421357525377Protein SCARECROW
5b3h_D7e-6421357525377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.600220.0flower| leaf| meristem| seed coat
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G285400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543283.10.0chitin-inducible gibberellin-responsive protein 1
RefseqXP_028191541.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445IBE00.0A0A445IBE0_GLYSO; Chitin-inducible gibberellin-responsive protein 1 isoform A
TrEMBLI1M3G40.0I1M3G4_SOYBN; Uncharacterized protein
STRINGGLYMA13G36120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-174scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]