PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G291400.1.p
Common NameGLYMA_13G291400, LOC100792902
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 250aa    MW: 27673.8 Da    PI: 7.9071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G291400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-1463109354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN  +++Lr+++P a     kKl+Ka+ L ++++++k+L
  Glyma.13G291400.1.p  63 KNHSEAERRRRARINAHLDTLRSVIPGA-----KKLDKATLLGEVIRHLKEL 109
                          58*************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.41860109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1163109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1363111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1464115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-473111No hitNo description
Gene3DG3DSA:3.30.70.2607.1E-5148190No hitNo description
CDDcd048732.13E-7148219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMEAFAPHR ISDGFPVCCG VIGSGYGSSS SLVLDKEKGE LVEAPVKLER KGVSPERSIE  60
ALKNHSEAER RRRARINAHL DTLRSVIPGA KKLDKATLLG EVIRHLKELK TNATQASEGL  120
MIPKDSDEIR VEEQEGGLNG FPYSIKASLC CEYKPGLLTD IRQALDALHL MIIRAEIATL  180
GGRMNSVFVI ISCKEQNIED PEYRQFLAGS VHQALRSVLD RFSVSQDMLE SRKRRRISIF  240
SSSSIGDFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
2232236KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532770.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G291400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541890.20.0transcription factor bHLH30
RefseqXP_028187680.10.0transcription factor bHLH30-like
TrEMBLA0A445IC130.0A0A445IC13_GLYSO; Transcription factor bHLH30 isoform A
TrEMBLK7M2J70.0K7M2J7_SOYBN; Uncharacterized protein
STRINGGLYMA13G36741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-30bHLH family protein