PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G292800.2.p

Common Name

GLYMA_13G292800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 222aa MW: 25534.2 Da PI: 5.8491

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G292800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.1e-10	182	216	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr +r NR +A+rsR RK+++i eLe+ v +L+ Glyma.13G292800.2.p 182 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQ 216 899***************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.519	180	216	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.3E-10	182	216	No hit	No description
SuperFamily	SSF57959	1.69E-8	182	216	No hit	No description
Pfam	PF00170	1.6E-8	182	216	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.45E-18	183	216	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MTQLPPKIPN MSPSWPDFSS HHQKMQLPPL KSGSNNNYQH NQNPSWVDEF LDFSSARRGA 60 HRRSVSDSIT YLDSPMKCGE NNNNNENEFD KFDDEQFMSM FTDEVVLSGV PLLPPTILSS 120 SNPSSPSDQN FFNDEKEKKE EHHHHQLKNE ADEVESQCKQ EIMQLPNDTN TCSSNERITD 180 PKRVKRILAN RQSAQRSRVR KLQYISELER SVTSLQVWDV T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28648	0.0	leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G292800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096900	0.0	BT096900.1 Soybean clone JCVI-FLGm-25J24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543312.1	1e-160	basic leucine zipper 61 isoform X1
Refseq	XP_025980674.1	1e-160	basic leucine zipper 34 isoform X2
Swissprot	Q9M2K4	9e-63	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	I1M3N7	1e-163	I1M3N7_SOYBN; Uncharacterized protein
STRING	GLYMA13G36870.2	1e-159	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-56	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G292800.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]