PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G296100.1.p
Common NameGLYMA_13G296100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 189aa    MW: 21261.2 Da    PI: 9.2098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G296100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-111968655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          ++E++RR+++++  + L +llP++ +++++ ls ++   +A++YIk+L+
  Glyma.13G296100.1.p 19 RIVEKNRRNHMKNLCSMLNSLLPNNNNTRGRELSRVDQIDEAINYIKNLE 68
                         589*********************76888888***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.031367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-121887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-81968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-111986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-41973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MADHQQGDQP SSTKGIERRI VEKNRRNHMK NLCSMLNSLL PNNNNTRGRE LSRVDQIDEA  60
INYIKNLETK VKMAQEKKES LILQRKRSRS GGSSSTSEAP KIEIHEVGSS LQIILTCGLD  120
NQIIFSEIIR ILQEENIVVK SVHSSSFAGN SMLNVVHAEI QQYSFLLETT AMSIEKLRRI  180
VDMHGGNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G296100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-34AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595447.15e-90transcription factor bHLH162
RefseqXP_028186634.15e-90transcription factor bHLH162-like
TrEMBLK7M2N81e-134K7M2N8_SOYBN; Uncharacterized protein
STRINGGLYMA13G37201.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2239734
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-16bHLH family protein