PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G303100.1.p
Common NameGLYMA_13G303100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 253aa    MW: 28905.1 Da    PI: 5.1605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G303100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10362646
                         HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  6 teEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46
                         ++Ed +l+ +  ++G+                      W+ Ia +++ gRt++++k++w++
  Glyma.13G303100.1.p  3 EQEDRKLIAYASRYGSWnwrqlprfadvkiklvnyfeVWSVIATHLP-GRTDNEIKNHWHT 62
                         79*************88******************************.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.696168IPR017930Myb domain
PfamPF002496.3E-8362IPR001005SANT/Myb domain
SuperFamilySSF466896.39E-9365IPR009057Homeodomain-like
CDDcd001672.35E-6362No hitNo description
Gene3DG3DSA:1.10.10.601.8E-14365IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKEQEDRKLI AYASRYGSWN WRQLPRFADV KIKLVNYFEV WSVIATHLPG RTDNEIKNHW  60
HTPLRKRFGK NAVHSNKKVK ATKSNSSESK QDKDSIENAN SRPQPRIILT PQLPLKKTCY  120
SDFLDACLES EDVNENIWTE SYVANISNSN TPMAENGKGS SNFHGSDAAG TIMDYNENLV  180
LENDDFGFLV ALQPTATTEN FWTDVYAADM SLVPNELLAP WVNESEEYFS SMYDADLWCQ  240
TNFHDLHLGL FH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G303100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194055.11e-101transcription factor MYB8-like
TrEMBLA0A0R0GW960.0A0A0R0GW96_SOYBN; Uncharacterized protein
STRINGGLYMA12G32541.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-14myb domain protein 63