PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G303200.1.p
Common NameGLYMA_13G303200, LOC100815765
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 228aa    MW: 26475.9 Da    PI: 6.7063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G303200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l+d+v+++G  +W++ ++  g+ R++k+c++rw++yl
  Glyma.13G303200.1.p 14 KGPWTPEEDRKLIDYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 61
                         79******************99************************97 PP
2Myb_DNA-binding58.91.2e-1867110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++ eE+e +v+++++lG++ W++Ia++++ gRt++++k++w++
  Glyma.13G303200.1.p  67 RGNFSHEEEETIVRLHEKLGNR-WSAIAAELP-GRTDNEIKNHWHT 110
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.488961IPR017930Myb domain
SuperFamilySSF466894.49E-3111108IPR009057Homeodomain-like
SMARTSM007171.5E-121363IPR001005SANT/Myb domain
PfamPF002499.4E-161461IPR001005SANT/Myb domain
CDDcd001673.70E-101661No hitNo description
PROSITE profilePS5129425.94362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665115IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002496.5E-1767110IPR001005SANT/Myb domain
CDDcd001674.16E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVRTPCCDKN GLKKGPWTPE EDRKLIDYVT KYGHWNWRLL PKFAGLARCG KSCRLRWLNY  60
LRPDVKRGNF SHEEEETIVR LHEKLGNRWS AIAAELPGRT DNEIKNHWHT ALKKRFERKP  120
KAKRRTEKEG NVVSKSMERV VLENCSEYAV ITTDAAAAIT NHENSVLEGD DYGLSFLDTY  180
TEPDVCANFW TEPYLIDNSY VPPEGDVVEL WSHNDLYMHE YCEGFFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121175109B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113120KRFERKPK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G303200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541925.11e-170transcription factor MYB4
RefseqXP_028189328.11e-170transcription factor MYB4-like
SwissprotQ9SJX88e-64MYB14_ARATH; Transcription factor MYB14
TrEMBLK7M2T31e-169K7M2T3_SOYBN; Uncharacterized protein
STRINGGLYMA13G37903.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-64myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]