PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G305500.1.p

Common Name

GLYMA_13G305500, LOC100803143

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 232aa MW: 25842.3 Da PI: 8.2029

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G305500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.2e-10	81	127	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f eL ++l ++ +++K +K++iL A + + +L Glyma.13G305500.1.p 81 KACREKLRRDKLNERFLELSSILEPS---RQPKSDKVAILSDAARVVIQL 127 678*********************...9***********9887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-13	69	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.176	76	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	80	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.97E-7	80	130	No hit	No description
SMART	SM00353	1.0E-7	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	83	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.20.5.170	6.3E-4	141	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDVNSSGGAS DWLYDYGFDI PVAGSDFMAS DSGGFRWGPQ SHNFKGPSNM SLEMEYSLDS 60 TVMENGPSKR LRTESCASGS KACREKLRRD KLNERFLELS SILEPSRQPK SDKVAILSDA 120 ARVVIQLRNE AKRLKEMNDE LQAKVKELKG EKNELRDEKN RLKEEKEKLE QQVKVANIQP 180 SFLPQAPDAK GQVGSHKLIP FIGYPGIAMW QFMSPAAVDT SKDHLLRPPV A*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23109	0.0	hypocotyl\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G305500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097126	0.0	BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543375.1	1e-171	transcription factor bHLH115
Refseq	XP_006594876.1	1e-171	transcription factor bHLH115
Swissprot	Q9C682	1e-69	BH115_ARATH; Transcription factor bHLH115
TrEMBL	I1M411	1e-170	I1M411_SOYBN; Uncharacterized protein
STRING	GLYMA13G38140.1	1e-170	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14916	12	14
Representative plant	OGRP755	17	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	7e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G305500.1.p
Entrez Gene	100803143

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]