PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G312900.1.p
Common NameGLYMA_13G312900, LOC100779075
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 703aa    MW: 76077.7 Da    PI: 7.7687
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G312900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.1e-083994361954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gL  +qV++WF N R +
  Glyma.13G312900.1.p 399 FEHflHPYPKDSDKVMLAKQTGLARSQVSNWFINARVR 436
                          664459******************************88 PP
2BELL1222.4e-39263334172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +rqelq+kk+kL+++l+eV++rY+qy++q+q+v+ssFe++ag+g+ak+Yt+lAlk+iS++FrcLkdai+ qi
  Glyma.13G312900.1.p 263 QRQELQMKKSKLVTMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQI 334
                          69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-73186332IPR006563POX domain
PfamPF075264.4E-51191331IPR006563POX domain
PROSITE profilePS5007111.726377440IPR001356Homeobox domain
CDDcd000861.33E-11380441No hitNo description
SMARTSM003891.3E-8380444IPR001356Homeobox domain
SuperFamilySSF466893.12E-16381446IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27383446IPR009057Homeodomain-like
PfamPF059201.8E-17397436IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MATYFNGSTS EIQPSADGGL QTLYLMNPTY VPYADAPHHP TTLLVNPNAP NLANIPHAPP  60
VSPNQQHHHV IHGVTSIIGS GNSDDHSRPS LIGENIAAFH GFSGGAGTAS TAAPRLHYNL  120
WGPVVDQPGT PSSSSGGGGF RRPSQQGLSL SLSSQQTNFR SVSGELDVAG QGHVAGIGNS  180
PMSASIGVSG VIMGSKYLKA AQELLDEVVN VGKGIYKEEK FSEKVKANRE STNSGAAGDG  240
GDGSSGGGEN SAGKQVVELS TAQRQELQMK KSKLVTMLDE VEQRYRQYHH QMQIVVSSFE  300
QAAGYGAAKS YTALALKTIS KQFRCLKDAI SAQIKATSKT LGEDDCLGVK VEGSRLRFVD  360
HHLRQQRALQ QLGMIQPNAW RPQRGLPERA VSILRAWLFE HFLHPYPKDS DKVMLAKQTG  420
LARSQVSNWF INARVRLWKP MVEEMYLEEI KEHEQGNGSE NTKSKESSKE LASTANVALD  480
HLQSKHESFN NQNTSPTEIS TSSSMSPMGG SLQSHSGFHL AGSSDMQIRS PNKPRSSEMQ  540
NSPSSILSVD MEMKHSGDHG NNRDANTKFG IERHHQQKDG YPLMTSNPNH GGGFGAFTME  600
DIGSRFNVTT EQLASRFHGN GVSLTLGLPH NENLSMSGTQ QHGFLSQNIH LGRRLEMGTN  660
GNEFCTINTA PPSSHSGTTY ESIDIQNRKR FVAHQLLPDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16386443158Homeobox protein Meis1
4xrs_B3e-16386443158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.589470.0cotyledon| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G312900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543416.10.0BEL1-like homeodomain protein 1
RefseqXP_006594920.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-144BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLI1M4930.0I1M493_SOYBN; Uncharacterized protein
STRINGGLYMA13G38910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-120BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]