PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G314600.2.p
Common NameGLYMA_13G314600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 324aa    MW: 36519.8 Da    PI: 9.2101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G314600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.53.4e-29209651128
                  NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s +++ +g+k+tLvf+ grapkge+t+W+mhey +
  Glyma.13G314600.2.p  20 IYQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKS-GSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCI 96 
                          556899**************************************.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.3061112IPR003441NAC domain
SuperFamilySSF1019417.32E-3321111IPR003441NAC domain
PfamPF023651.4E-142495IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRRVFKSFLR LSFVNTSLGI YQSDNEWFFF SPRGRKYPNG SQSKRATECG YWKATGKERN  60
VKSGSNIIGT KRTLVFHLGR APKGERTEWI MHEYCINDKS QESLVICRLK RNTEFRLSDA  120
SNRASSSQRH PVNSHESGCA ISGGGIDQRD ACEQDKEVGC SSKRDSSSYG SPSMEQIDSV  180
SESNQRPVNE ATFTESSGQP KEGYEEDCYA EILKDDIIKL DESSVLVESH TRPQDPTQMQ  240
PAPQGTAQRR IRLRVGNSKH SRAVVRFPST MHSSKNTFFA RTTNSLVVLA FFVFTLMVLY  300
FLSLVRGQKQ DKYCGEFSGV NHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-242411170164NO APICAL MERISTEM PROTEIN
1ut4_B1e-242411170164NO APICAL MERISTEM PROTEIN
1ut7_A1e-242411170164NO APICAL MERISTEM PROTEIN
1ut7_B1e-242411170164NO APICAL MERISTEM PROTEIN
3swm_A1e-242411173167NAC domain-containing protein 19
3swm_B1e-242411173167NAC domain-containing protein 19
3swm_C1e-242411173167NAC domain-containing protein 19
3swm_D1e-242411173167NAC domain-containing protein 19
3swp_A1e-242411173167NAC domain-containing protein 19
3swp_B1e-242411173167NAC domain-containing protein 19
3swp_C1e-242411173167NAC domain-containing protein 19
3swp_D1e-242411173167NAC domain-containing protein 19
4dul_A1e-242411170164NAC domain-containing protein 19
4dul_B1e-242411170164NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G314600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150409e-93AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980592.10.0uncharacterized protein LOC100527616 isoform X1
TrEMBLA0A0R0GWM40.0A0A0R0GWM4_SOYBN; Uncharacterized protein
STRINGGLYMA13G39090.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-63NTM1-like 8