PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G315300.1.p
Common NameGLYMA_13G315300, LOC100784960
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 254aa    MW: 28450.6 Da    PI: 9.0346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G315300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.91.5e-4741341127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          lppGfrF Pt+eelvv+yL++++eg+ +++++vi+ +di+ vePw+Lp+     +++++++w+fFs+r++++a+g r+nr+t+sgyWkat
  Glyma.13G315300.1.p   4 LPPGFRFYPTEEELVVFYLHNQLEGQIHDTSRVIPVTDINGVEPWNLPTlageFCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKAT 93 
                          79****************************9*****************545654445777****************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          g+  +v+s++++++g+kkt+vfykg+ap+g+kt+W mh+y+
  Glyma.13G315300.1.p  94 GSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHQYK 134
                          ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-493159IPR003441NAC domain
PROSITE profilePS5100549.0344161IPR003441NAC domain
PfamPF023657.4E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEFLPPGFRF YPTEEELVVF YLHNQLEGQI HDTSRVIPVT DINGVEPWNL PTLAGEFCRG  60
DTEQWFFFSP RQEREARGGR PNRTTASGYW KATGSPGHVY SSDNKVIGMK KTMVFYKGKA  120
PTGRKTKWKM HQYKAIEHSH QSNTAPPKLR HEFSLCRVYV ISGSFRSFDR RPLEMPRIEL  180
RVDGDRGAAS TSTQQRAAVV DGLSSSDTSS HSGGGRGGSH ISEAGAGSSG TNWNASNSRV  240
EEPLWEWEQL NWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-38415920166NAC domain-containing protein 19
3swm_B4e-38415920166NAC domain-containing protein 19
3swm_C4e-38415920166NAC domain-containing protein 19
3swm_D4e-38415920166NAC domain-containing protein 19
3swp_A4e-38415920166NAC domain-containing protein 19
3swp_B4e-38415920166NAC domain-containing protein 19
3swp_C4e-38415920166NAC domain-containing protein 19
3swp_D4e-38415920166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G315300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352341e-130AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543426.10.0NAC domain-containing protein 90 isoform X2
RefseqXP_028188791.10.0NAC domain-containing protein 90-like isoform X2
SwissprotQ9FMR33e-90NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0B2RI020.0A0A0B2RI02_GLYSO; NAC domain-containing protein 90
TrEMBLI1M4B50.0I1M4B5_SOYBN; Uncharacterized protein
STRINGGLYMA13G39160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-89NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]