PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G321800.3.p
Common NameGLYMA_13G321800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 201aa    MW: 22682.3 Da    PI: 9.752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G321800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064122145123
                          EEETTTT.EEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                          y+C+ C+ k Fs  s+L++H + +
  Glyma.13G321800.3.p 122 YVCKRCNqKQFSVLSDLRTHEKHC 145
                          9*******************9876 PP
2zf-C2H211.80.00073153168520
                          TTTEEESSHHHHHHHH CS
              zf-C2H2   5 dCgksFsrksnLkrHi 20 
                           Cg+sFsrk+ L+ H 
  Glyma.13G321800.3.p 153 TCGTSFSRKDKLMGHV 168
                          6************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAISSMNSII QEIIVTATSM MFTCQQMALT TPPGFERDAN LRMHMRAHGD EYKTNAALSN  60
PIKNKGNLLE GGRECLMSTV KPKYSCPQEG CRWNQRHVKF QPLKSMICAK NHYKRSHCPK  120
MYVCKRCNQK QFSVLSDLRT HEKHCGDLKW QCTCGTSFSR KDKLMGHVAL FVGHQPAAAI  180
NNSNALSFSA KLEQQHTLQM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.238371e-133root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G321800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-125AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189001.11e-125protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X1
RefseqXP_028189002.11e-125protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X2
RefseqXP_028189003.11e-125protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X3
SwissprotQ0WT247e-73STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0R0GXF01e-150A0A0R0GXF0_SOYBN; Uncharacterized protein
STRINGGLYMA13G39610.21e-124(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-75C2H2 family protein